i found a way to get past the glitch, if you get too far into the story the glitch will come and mess up the bomb challenges, however I have found a way to get past this. Even if you have already beat the story. First, get each effect type from Piri. Second, go to the DNA section in the menu and go to sequence 3 memory 5, A familiar face. Then, go find the nearest bomb crafting station and make each effect type. This memory is just after you learn how to craft bombs. This worked for me so I'm sorry if for some reason it wont work for you guys